Publications

Light-microscopy based dense connectomic reconstruction of mammalian brain tissue.
M.R. Tavakoli, J. Lyudchik, M. Januszewski, V. Vistunou, N. Agudelo-Duenas, J. Vorlaufer, C. Sommer,  C. Kreuzinger, B. Oliveira, A. Cenameri, G. Novarino, V. Jain, J.G. Danzl.
BioRxiv (2024) https://www.biorxiv.org/content/10.1101/2024.03.01.582884v1

Super-resolution expansion microscopy in plant roots.
M. Gallei, S. Truckenbrodt, C. Kreuzinger, S. Inumella, V. Vistunou, C. Sommer, M.R. Tavakoli, N. Agudelo-Duenas, J. Vorlaufer, W. Jahr, M. Randuch, A. Johnson, E. Benkova, J. Friml, J.G. Danzl.
BioRxiv (2024) https://www.biorxiv.org/content/10.1101/2024.02.21.581330v1

Chiral and nematic phases of flexible active filaments.
Z. Dunajova, B. P. Mateu, P. Radler, K. Lim, D. Brandis, P. Velicky, J. G. Danzl, R. W. Wong, J. Elgeti, E. Hannezo & M. Loose.
Nature Physics (2023). https://doi.org/10.1038/s41567-023-02218-w

Imaging brain tissue architecture across millimeter to  nanometer scales.
J. Michalska, J. Lyudchik, P. VelickyH. Stefanickova, J. F. WatsonA. Cenameri, C. Sommer, N. Amberg, A. Venturino, K. Roessler, T. Czech, R. Höftberger, S. Siegert, G. Novarino, P. Jonas, J.G. Danzl.
Nature Biotechnology (2023) https://www.nature.com/articles/s41587-023-01911-8 (open access). See associated News & Views article: https://www.nature.com/articles/s41587-023-02036-8.

Dense 4D nanoscale reconstruction of living brain tissue. 
Velicky, E. Miguel, J. M. Michalska, J. Lyudchik, D.Wei, Z. Lin, J. F. Watson, J. Troidl, J. Beyer, Y. Ben-Simon, C. Sommer, W. Jahr, A. Cenameri, J. Broichhagen, S. G. N. Grant, P. Jonas, G. Novarino, H. Pfister, B. Bickel and J. G. Danzl.
Nature Methods (2023) https://www.nature.com/articles/s41592-023-01936-6
(open access). See associated Research Briefing: http://dx.doi.org/10.1038/s41592-023-01937-5. See also: https://www.nature.com/articles/s41592-023-02158-6.

CHD8 haploinsufficiency links autism to transient alterations in excitatory and inhibitory trajectories.
C. E. Villa, C. Cheroni, C. P. Dotter, A. López-Tóbon, B. Oliveira, R. Sacco, A. Ç. Yahya, J. Morandell, M. Gabriele, M. R. Tavakoli, J. Lyudchik, C. Sommer, M. Gabitto, J. G. Danzl, G. Testa, G. Novarino.
CellReports. (Apr 2022).
https://doi.org/10.1016/j.celrep.2022.110615

A direct excitatory projection from entorhinal layer 6b neurons to the hippocampus contributes to spatial coding and memory.
Y. Ben-Simon, K. Kaefer, P. Velicky, J. Csicsvari, J. G. Danzl, P. Jonas.
Nature Comm. (August 2022).
https://www.nature.com/articles/s41467-022-32559-8. Biorxiv: https://www.biorxiv.org/content/10.1101/2022.01.26.477814v1

Cul3 regulates cytoskeleton protein homeostasis and cell migration during a critical window of brain development.
J. Morandell, L. A Schwarz, B. Basilico, S. Tasciyan, G. Dimchev, A. Nicolas, C. Sommer, C. Kreuzinger, C. P Dotter, L. S Knaus, Z. Dobler, E. Cacci, F. K M Schur, J. G Danzl,  G. Novarino.
Nature Comm(May 2021).
https://www.nature.com/articles/s41467-021-23123-x.

Strategies to maximize performance in Simulated Emission Depletion (STED) nanoscopy of biological specimens.
W. Jahr, P. Velicky, J.G. Danzl.
Methods (Mar 2020). Volume 174, Pages 27-41, Review article. https://doi.org/10.1016/j.ymeth.2019.07.019. Download PDF.

Advantages of acute brain slices prepared at physiological temperature in characterization of synaptic functions.
K. Eguchi, P. Velicky, E. Hollergschwandtner, M. Itakura, Y. Fukazawa, J.G. Danzl, R. Shigemoto.
Front. Cell. Neurosci. (Mar 2020).
https://doi.org/10.3389/fncel.2020.00063

A practical guide to optimization in X10 expansion microscopy;
S. Truckenbrodt, C. Sommer, S. Rizzoli, & J. G. Danzl.
Nature Protocols 14, 832–863, doi: 10.1038/s41596-018-0117-3 (2019).
https://rdcu.be/bnkMQ.

A Fast and Simple Contact Printing Approach to Generate 2D Protein Nanopatterns;
Lindner, A. Tresztenyak, G. Fülöp, W. Jahr, A. Prinz, I. Prinz, J. G. Danzl, G. Schütz, E. Sevcsik.
Front Chem, doi: 10.3389/fchem.2018.00655 (2019).

Optical control of L-type Ca2+ channels using a diltiazem photoswitch.
T. Fehrentz, F. M. E. Huber, N. Hartrampf, T. Bruegmann, J. A. Frank, N. H. F. Fine, D. Malan, J. G. Danzl, D. B. Tikhonov, M. Sumser, P. Sasse, D. J. Hodson, B. S. Zhorov, N. Klöcker & D. Trauner.
Nature Chemical Biology 14, 764-767 (2018).

Novel reversibly switchable fluorescent proteins for RESOLFT and STED nanoscopy engineered from the bacterial photoreceptor YtvA.
C. Gregor, SC Sidenstein, M Andresen, SJ Sahl, J.G. Danzl, SW Hell.
Sci Rep doi: 10.1038/s41598-018-19947-1 (2018).

Multicolour multilevel STED nanoscopy of Actin/Spectrin organization at synapses.
S. C. Sidenstein, E. D’Este, M. J. Böhm, J. G. Danzl, V. N. Belov & S. W. Hell.
Scientific Reports, 6:26725 (2016).

Fluorescent rhodamines and fluorogenic carbopyronines for super-resolution STED microscopy in living cells.
A. N. Butkevich, G. Y. Mitronova, S. C. Sidenstein, J. L. Klocke, D. Kamin, D. N. H. Meineke, E. D’Este, P.-
T. Kraemer, J. G. Danzl, V. N. Belov, S. W. Hell.
Angewandte Chemie Int. Edition, DOI: 10.1002/anie.201511018 (2016).

Coordinate-targeted fluorescence nanoscopy with multiple off-states.
J. G. Danzl*, S.C. Sidenstein*, C. Gregor, N. Urban, P. Ilgen, S. Jakobs, S.W. Hell.
Nature Photonics 10, 122. *equal contribution. Nature Photonics cover 02/2016.
Highlighted in Nature Methods 13, 196 (2016).

Coordinate-targeted and coordinate-stochastic super- resolution microscopy with the reversibly switchable fluorescent protein Dreiklang.
N.A. Jensen, J. G. Danzl, K. I. Willig, F. Lavoie-Cardinal, T. Brakemann, S. W. Hell, S. Jakobs.
ChemPhysChem 15, 756 (2014).

Bulla in the lung.
B.V. Erne, M. Graff, W. Klemm, J. G. Danzl, G. Leschber.
The Lancet 380, 1280. Clinical case report (2012).

Preparation and spectroscopy of a metastable Mott insulator state with attractive interactions.
M. J. Mark, E. Haller, K. Lauber, J. G. Danzl, A. Janisch, H. P. Büchler, A. J. Daley, and H.-C. Nägerl.
Phys. Rev. Lett. 108, 215302. OA: arXiv:1201.1008 (2012).

Three-Body Correlation Functions and Recombination Rates for Bosons in Three Dimensions and One
Dimension.
E. Haller, M. Rabie, M. J. Mark, J. G. Danzl, R. Hart, K. Lauber, G. Pupillo, H.-C. Nägerl.
Phys. Rev. Lett. 107, 230404. OA: arXiv:1107.4516 (2011).

Precision Measurements on a Tunable Mott Insulator of Ultracold Atoms.
M. J. Mark, E. Haller, K. Lauber, J. G. Danzl, A. J. Daley, H.-C. Nägerl.
Phys. Rev. Lett. 107, 175301. OA: arXiv:1107.1803 (2011).

Demonstration of the temporal matter-wave Talbot effect for trapped matter waves.
M. J. Mark, E. Haller, J. G. Danzl, K. Lauber, M. Gustavsson, H.-C. Nägerl.
New J. Phys. 13, 085008. OA (2011).

Optimal trapping wavelengths of Cs2 molecules in an optical lattice.
R. Vexiau, N. Bouloufa, M. Aymar, J. G. Danzl, M. J. Mark, H.-C. Nägerl, O. Dulieu.
Eur. Phys. J. D 65, 243. OA: arXiv:1102.1793 (2011).

Ultracold and dense samples of ground-state molecules in lattice potentials.
H.-C. Nägerl, M. J. Mark, E. Haller, M. Gustavsson, R. Hart, J. G. Danzl.
J. Phys.: Conf. Ser. 264, 012015, Proceedings of the 22nd International Conference on Atomic Physics (ICAP) 2010. OA: arXiv:1011.0179 (2011).

Global analysis of data on the spin-orbit coupled A1Σ+u and b3Πu states of Cs2.
J. Bai, E. H. Ahmed, B. Beser, Y. Guan, S. Kotochigova, A. M. Lyyra, S. Ashman, C. M. Wolfe, J. Huennekens, F. Xie, D. Li, L. Li, M. Tamanis, R. Ferber, A. Drozdova, E. Pazyuk, A. V. Stolyarov, J. G. Danzl, H.-C. Nägerl, N. Bouloufa, O. Dulieu, C. Amiot, H. Salami, T. Bergeman.
Phys. Rev. A 83, 032514. OA: arXiv:1101.5412 (2011).

Pinning quantum phase transition for a Luttinger liquid of strongly interacting bosons.
E. Haller, R. Hart, M. J. Mark, J. G. Danzl, L. Reichsöllner, M. Gustavsson, M. Dalmonte, G. Pupillo, H.-C. Nägerl.
Nature 466, 597. OA: arXiv:1004.3168 (2010).

Interference of interacting matter waves.
M. Gustavsson, E. Haller, M. J. Mark, J. G. Danzl, R. Hart, A. J. Daley, H.-C. Nägerl.
New J. Phys. 12, 065029. OA (2010).

Inducing Transport in a Dissipation-Free Lattice with Super Bloch Oscillations.
E. Haller, R. Hart, M. J. Mark, J. G. Danzl, L. Reichsöllner, H.-C. Nägerl.
Phys. Rev. Lett. 104, 200403. OA: arXiv:1001.1206 (2010).

Confinement-Induced Resonances in Low-Dimensional Quantum Systems.
E. Haller, M. J. Mark, R. Hart, J. G. Danzl, L. Reichsöllner, V. Melezhik, P. Schmelcher, H.-C. Nägerl.
Phys. Rev. Lett. 104, 153203. OA: arXiv:1002.3795 (2010).

Production of a quantum gas of rovibronic ground-state molecules in an optical lattice.
J. G. Danzl, M. J. Mark,E. Haller, G. Gustavsson, R. Hart, H.-C. Nägerl.
Laser Spectroscopy 256, Proceedings of the XIX conference on Laser spectroscopy 2009 (2010).

An ultracold high-density sample of rovibronic ground-state molecules in an optical lattice.
J. G. Danzl, M. J. Mark, E. Haller, M. Gustavsson, R. Hart, J. Aldegunde, J. M. Hutson, H.-C. Nägerl.
Nature Physics 6, 265 (2010). OA: arXiv:0909.4700 (2010).

Realization of an Excited, Strongly-Correlated Quantum Gas Phase.
E. Haller, M. Gustavsson, M. J. Mark, J. G. Danzl, R. Hart, G. Pupillo, H.-C. Nägerl.
Science 325, 1224. OA: arXiv:1006.0739 (2009).

Deeply bound ultracold molecules in an optical lattice.
J. G. Danzl, M. J. Mark, E. Haller, M. Gustavsson, R. Hart, A. Liem, H. Zellmer, H.-C. Nägerl.
New Journal of Physics 11, 055036, IOP select. OA (2009).

Precision molecular spectroscopy for ground state transfer of molecular quantum gases.
J. G. Danzl, M. J. Mark, E. Haller, M. Gustavsson, N. Bouloufa, O. Dulieu, H. Ritsch, R. Hart, H.-C. Nägerl.
Faraday Discussions 142, 283. OA: arXiv:0811.2374 (2009).

Dark resonances for ground state transfer of molecular quantum gases.
M. J. Mark, J. G. Danzl, E. Haller, M. Gustavsson, N. Bouloufa, O. Dulieu, H. Salami, T. Bergeman, H. Ritsch, R. Hart, H.-C. Nägerl.
Appl. Phys. B 95, 219, invited paper. OA: arXiv:0811.0695 (2009).

Quantum gas of deeply bound ground state molecules.
J. G. Danzl, E. Haller, M. Gustavsson, M. J. Mark, R. Hart, N. Bouloufa, O. Dulieu, H. Ritsch, H.-C. Nägerl.
Science 321, 1062. OA: arXiv:0806.2284 (2008).

Metastable Feshbach molecules in high rotational states.
S. Knoop, M. Mark, F. Ferlaino, J. G. Danzl, T. Kraemer, H.-C. Nägerl, R. Grimm.
Phys. Rev. Lett. 100, 083002. OA: arXiv:0710.4052 (2008).

Control of interaction-induced dephasing of Bloch oscillations.
M. Gustavsson, E. Haller, M. J. Mark, J. G. Danzl, G. Rojas-Kopeinig, H.-C. Nägerl.
Phys. Rev. Lett. 100, 080404. OA: arXiv:0710.5083 (2008).

Spectroscopy of ultracold, trapped cesium Feshbach molecules.
M. Mark, F. Ferlaino, S. Knoop, J. G. Danzl, T. Kraemer, C. Chin, H.-C. Nägerl, R. Grimm.
Phys. Rev. A 76, 042514. OA: arXiv:0706.1041 (2007).

Evidence for Efimov quantum states in an ultracold gas of caesium atoms.
T. Kraemer, M. Mark, P. Waldburger, J. G. Danzl, C. Chin, B. Engeser, A. D. Lange, K. Pilch, A. Jaakkola, H.-C. Nägerl and R. Grimm.
Nature 440, 315. OA: arXiv: cond-mat/0512394 (2006).

Experimental evidence for Efimov quantum states.
HC Nägerl, T. Kraemer, M. Mark, P. Waldburger, J. G. Danzl, B. Engeser, A. D. Lange, K. Pilch, A. Jaakkola, C. Chin, R. Grimm.
Atomic Physics 20, AIP Conference Proceedings 869, 269 (2006).

ICln ion channel splice variants in C. elegans: Voltage dependence and interaction with an operon partnerprotein.
J. Fürst, M. Ritter, J. Rudzki, J. G. Danzl, M. Gschwentner, E. Scandella, M. Jakab, M. König, B. Oehl, F. Lang, P. Deetjen, M. Paulmichl.
J. Biol. Chem. 277(6), 4435. OA (2002).

Structure and Function of the Ion Channel ICln.
J. Fürst, M. Jakab, M. König, M. Ritter, M. Gschwentner, J. Rudzki, J. Danzl, M. Mayer, C. M. Burtscher, J. Schirmer, B. Maier, M. Nairz, S.Chwatal, M. Paulmichl.
Cell. Physiol. Biochem. 10, 329. Review article (2000).